rs51683020 SNP Detail

Summary

• ID
  rs51683020
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25113622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTAAGAT CACCAGAGCT
  TCAGGTCCAG GAATATATGA ACTATAGGCA AAAAGGGATT CTTGAACTGT GTTGGTCCAG
  GTTGGTGGAG TTCTTGGTTC AAGGCAAAAG GAGAAAGCTG ATAATGCCCA CAGTCAACAT
  TAAAGACGAT TGTGCCAGCC AGCTCACGAG GGAGGGGAGC GTTTATTTCT GAAACTTGCA
  S
  TCTTAGAGGT GTTATTTCAT GGCCTGTCTG CCCTGTCATT TTTGAGCCTG TGCTGAGATA
  CATCATGGAG AGAGTGCATA GTGGAGGAAA CTGCTCACTT CTCGCATCTA GGAAGCAAAG
  AAGATAGCAA GAACCATAAA CCTAATAGTT CATTTAAGGG TGTATACGCC ACCATGACAT
  AACTGTTTTC TACTGAACTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60980607	NES16142447	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C		G	G	C	G		G
ss322121698	CHEV_7_26199216	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51683020					SNP	C	C	C	C	C	C	G	C	C	C	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60980607	NES16142447	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25113622 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	1311 bp upstream
Tssr2143	transcription start site region 2143	1395 bp upstream
Tssr2144	transcription start site region 2144	1247 bp upstream
Tssr2145	transcription start site region 2145	1223 bp upstream
Tssr2146	transcription start site region 2146	1210 bp upstream
Tssr2147	transcription start site region 2147	1165 bp upstream
Tssr71243	transcription start site region 71243	1381 bp upstream
Tssr71244	transcription start site region 71244	1356 bp upstream
Tssr71245	transcription start site region 71245	1341 bp upstream
Tssr71246	transcription start site region 71246	1312 bp upstream
Tssr71247	transcription start site region 71247	1284 bp upstream