rs51684246 SNP Detail

Summary

• ID
  rs51684246
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98179404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAAACG TCCTCTAGAT
  ACTAAACATA TCCAACTCTC CCGCAAGCCT GGCCCGGCCT GTTTTCCCCA GCTGTGCTGG
  AACGGCCCTC CGCGTGGTTT AGAGACTCAG GACCAGCTGT CTCCTGGATA GTGACGGCCT
  TATGCCTCAT CCCTCCGCAC CTTTCATCCA TCACACACCG ACCTAGTGAC GCAGGATTTA
  R
  GGTTTAAGAA AGGGGACTTC CTCTTTTCTT TCTCTTTTTT TTTCTATTTG ATAATTTTTC
  CATTTTTCAT TAATTCTGAG AGTTTCATGC GACGTGTACT GATCATATAT ATTTTTCACA
  CACACACACC CAACACCTCC CTACCCCTAA CTCCTCTGAA ATCAACCCTC ACCTCCCTAC
  ACACACCTCA ACTTCGTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61199538	NES16709306	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs51684246					SNP	A	A	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61199538	NES16709306	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98179404 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	528 bp upstream
Cpgi16083	CpG island 16083	within coordinates
Gm42759	predicted gene 42759	within coordinates
Rr615103	regulatory region 615103	12 bp distal
Rr615104	regulatory region 615104	1382 bp proximal
Tssr1554	transcription start site region 1554	583 bp upstream
Tssr47433	transcription start site region 47433	821 bp downstream
Tssr47434	transcription start site region 47434	809 bp downstream
Tssr47435	transcription start site region 47435	435 bp downstream
Tssr47436	transcription start site region 47436	256 bp downstream
Tssr47437	transcription start site region 47437	235 bp downstream
Tssr47438	transcription start site region 47438	1755 bp upstream
Tssr51988	transcription start site region 51988	929 bp upstream
Tssr51989	transcription start site region 51989	918 bp upstream
Tssr51990	transcription start site region 51990	898 bp upstream
Tssr51991	transcription start site region 51991	780 bp upstream
Tssr51992	transcription start site region 51992	725 bp upstream
Tssr51993	transcription start site region 51993	553 bp upstream
Tssr51994	transcription start site region 51994	507 bp upstream
Tssr51995	transcription start site region 51995	291 bp upstream
Tssr51996	transcription start site region 51996	229 bp upstream
Tssr51997	transcription start site region 51997	198 bp upstream
Tssr51998	transcription start site region 51998	157 bp upstream
Tssr51999	transcription start site region 51999	124 bp upstream
Tssr52000	transcription start site region 52000	96 bp upstream
Tssr52001	transcription start site region 52001	82 bp upstream
Tssr52002	transcription start site region 52002	58 bp upstream
Tssr52003	transcription start site region 52003	22 bp upstream