rs51685276 SNP Detail

Summary

• ID
  rs51685276
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:124786912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTGGGGGCA CGTACCTGGG ACCAGCCTTC CGTGGACTGA
  AGGGGAGGAC CCTCTATCCC TCTGTAAGTG CTGTTTGGGG CCAGTGCCAG GTCCGCATCC
  R
  CTACATGGGC GAAAGAAGAG GTGAGATACG GACTAGGTGT GGGGAGATCA CTACTCTTGG
  CAATGGTTTG GGCTGGAAAC TCATGGTTGG AGCACAGGAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60941241	NES16184866	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51685276					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60941241	NES16184866	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:124786912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17971	CpG island 17971	75 bp distal
Gm67878	predicted gene, 67878	1741 bp upstream
Rr145728	regulatory region 145728	within coordinates
Rr145729	regulatory region 145729	1688 bp proximal
Spsb2	splA/ryanodine receptor domain and SOCS box containing 2	within coordinates
Tpi1	triosephosphate isomerase 1	637 bp downstream
Tssr58846	transcription start site region 58846	1245 bp downstream
Tssr58847	transcription start site region 58847	1016 bp downstream
Tssr58848	transcription start site region 58848	993 bp downstream
Tssr58849	transcription start site region 58849	189 bp downstream