rs51686442 SNP Detail

Summary

• ID
  rs51686442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88192494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGAGGAT CAGGAACTCA
  TGGTTACCTT GACTATCCAA GGAGTCCAAG GTCAGCCCAA GCTATGCAAG ACTGCCTCAA
  AAACCAAATA AAACATCTCC CCCACCCCCA CAACCAGCGC TCTTAAGACT AAGCCGAGAG
  GTGTGAACAG CGTTCTGTCA TGACTCAACT CATGGATTTA ACACCGTGCT CTCCTGAAGG
  R
  CACTCACCTA CTCAGAAGCA GAAGTGAGGA AGGTGAAGAT GGGGGAGTGG GGAGTAGAGA
  CACTGTAAGT AATTCATGTT AAGAGGAAAA CTGCCACTGA GAATCCCCTG AATAAGATAA
  AGAGACACAG TAATGGCCAA GGCTGGCTAG AGAAGCCCAA GGCACCAACA TCCCACAAGA
  AAGGACAGAG ATGATGCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63352314	NES17507684	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G	G	G	G	A	G	G	G	A	G
ss144899320	ENSMUSSNP5682405	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51686442					SNP	A	G	G	G	G	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63352314	NES17507684	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88192494 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Rr18063	regulatory region 18063	1707 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	46 bp downstream