rs51687661 SNP Detail

Summary

• ID
  rs51687661
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130554382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAC TGAAAGGTCT GGTACATTTT
  W
  TCTGCGTTCT AAAATTGGCT CACTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61080239	NES16598203	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	T	A	T	T	T		T	T	T	T		T
ss135899356	ENSMUSSNP2370338	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					T
ss320966491	CHEV_3_130463651	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51687661					SNP	T	A	A	A	T	A	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080239	NES16598203	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130554382 () rs orientation: forward

Symbol	Name	Function Class
Gm42997	predicted gene 42997	within coordinates
Gm43522	predicted gene 43522	within coordinates
Gm65129	predicted gene, 65129	1178 bp upstream
Rr585206	regulatory region 585206	1595 bp distal
Rr585207	regulatory region 585207	within coordinates
Rr585208	regulatory region 585208	192 bp proximal