rs51687720 SNP Detail

Summary

• ID
  rs51687720
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127440949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAAATGAC GCATTCCCAA
  CCCTTTGGGC AACTAGATCT CGGCTCCAAT ATGAGATGTT CCGGTAGTGG GGGGGGGGGG
  AGCAGCGGGG CGGGCTCTGG ACTCAGGCAG CCTCGCTTCC GTTCGGCTGC CACTGCTTCC
  GACCTCCGCC TTTCCCTCTA GCGAGGACGA GCCGAGCCCT CGCGCGCATG CTCGGAGTCA
  T
  CCCCCGAGGG GCGGGGCGGC AGCTGCGGGA GCAGGATGGG GGGAAGAGAA GGGAATTCCA
  ACCTGTAGAA CTTTGGGGGT CCTATGATCG GGTTCTTCCC CACGACTGTG GATGGTGAAA
  GGGGTGGGGC CTTTGGCGGC TCCGGGGTGT ACTGGAGTTC GCTGGGTGAG GGAGGGGGTG
  TCAAGTGTGA GAGAGGTGCA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss145882877	ENSMUSSNP410100	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs51687720					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127440949 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19771	CpG island 19771	within coordinates
Gm72953	predicted gene, 72953	within coordinates
Rr153806	regulatory region 153806	1549 bp distal
Rr166763	regulatory region 166763	within coordinates
Rr400656	regulatory region 400656	61 bp downstream
Stx4a	syntaxin 4A (placental)	within coordinates
Tssr69296	transcription start site region 69296	759 bp downstream
Tssr69297	transcription start site region 69297	34 bp downstream
Tssr69298	transcription start site region 69298	within coordinates
Tssr69299	transcription start site region 69299	40 bp upstream
Tssr69300	transcription start site region 69300	80 bp upstream
Tssr69301	transcription start site region 69301	89 bp upstream
Tssr69302	transcription start site region 69302	127 bp upstream
Tssr69303	transcription start site region 69303	170 bp upstream
Tssr75044	transcription start site region 75044	296 bp upstream
Tssr75045	transcription start site region 75045	688 bp downstream