rs51688019 SNP Detail

Summary

• ID
  rs51688019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98940142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTTTGCAC CTGGTAGCCT TTCCAGGTCA GGGGGACTGT
  GCCACAACCT TGGGTGCTGG ATAGAACTAT AGCCTGAAGT GGCCTTGGGT CACTGGTCCC
  Y
  GGGTCACTGG TCGTGACCGT ACATCCCAAG AGCCCCAGCT AGCATTAAAC AGATCCAGAG
  TGAGACATCC GGGTGGCTCA GCACCCAGGA CGAGGCTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148463625	ENSMUSSNP4771872	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325079660	CHEV_15_98872692	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs51688019					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98940142 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7689	CpG island 7689	1891 bp distal
Gm41399	predicted gene, 41399	within coordinates
Gm62755	predicted gene, 62755	within coordinates
Rr509290	regulatory region 509290	1733 bp distal
Rr509291	regulatory region 509291	1755 bp distal
Rr509292	regulatory region 509292	963 bp distal
Rr509293	regulatory region 509293	191 bp proximal
Rr509294	regulatory region 509294	1937 bp proximal