rs51688397 SNP Detail

Summary

• ID
  rs51688397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23622134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGC AAGTATACTC TACTGTGTGG
  Y
  TTCCTCCCCA TCAACAAGGC TTTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148057256	ENSMUSSNP5192046	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss321488921	CHEV_5_22922954	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51688397					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23622134 () rs orientation: forward

Symbol	Name	Function Class
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Cpgi15579	CpG island 15579	1114 bp proximal
Gm57286	predicted gene, 57286	within coordinates
Gm72704	predicted gene, 72704	1163 bp upstream
Rr377698	regulatory region 377698	1910 bp downstream
Rr608093	regulatory region 608093	1734 bp distal
Rr608094	regulatory region 608094	602 bp distal
Rr608095	regulatory region 608095	1169 bp distal
Rr608096	regulatory region 608096	673 bp proximal
Rr608097	regulatory region 608097	1166 bp proximal
Rr608098	regulatory region 608098	1174 bp proximal
Rr608099	regulatory region 608099	1389 bp proximal
Tssr45362	transcription start site region 45362	1473 bp upstream
Tssr50265	transcription start site region 50265	1378 bp downstream