rs51688963 SNP Detail

Summary

• ID
  rs51688963
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:6353408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AATCTCTGAA AGGTACATAT TGACAAAAGG AGGAGTAGAA
  AGACCTATGA TGTTAGTTTA TAATTCCTTA AGAATCTGTT CCGTTGGATT GAATAATAAT
  Y
  CAATATTATT CTGTATGCTG TGCATATAGA AATTATTGTT TCTCTGTAGT AGTACACTGG
  TTTCTTGGAC TTCTTCATAC TTAAGGTCAA ATAAGATGCC C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146278407	ENSMUSSNP1468097	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51688963					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6353408 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr551374	regulatory region 551374			677 bp proximal
Rr551375	regulatory region 551375			1461 bp proximal
Usp6nl	USP6 N-terminal like			Intron
				Noncoding-Transcript-Variant