rs51689287 SNP Detail

Summary

• ID
  rs51689287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127691484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAACAACG AATGGTTTTG
  CTTTCCTTTA ATCCGTGCAT TGAGGAAAAG GTTATGGTGT AGCTGGTATA TCAGACTGTC
  GATGGAAATT ATTTCCTATT TAACAAATAG GCCCAGAGAC GAGTAACTCG TTTGGGAAAG
  CCTCTTTTAA AATGCCTTCA GGGGCTGGAG AGATGGCTCA GCGGTTAACA GTACTGACTG
  Y
  TCTTTCAGAG ATCCTGAGTC CTATCCCCAG CAATCAGATG GTGGCTCACC ACCATGTGCA
  ATGGAATCCA ATGCCCTGTC CTGGTATGCA GGTATACATG CAATAGAGCA CTCAGATACA
  TAAAATAAAT AAACCTTAAA AAAAGAAAAG ACTAGTACCC AAAATGTCTT TAGGCCCAGC
  CAAGGAATTA AATAGGCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874544	ENSMUSSNP1042326	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320958015	CHEV_3_127600753	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51689287					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127691484 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	1312 bp distal
Fam241a	family with sequence similarity 241, member A	1512 bp upstream
Rr398009	regulatory region 398009	1262 bp downstream
Rr584896	regulatory region 584896	1816 bp distal
Rr584897	regulatory region 584897	1021 bp distal
Tssr35608	transcription start site region 35608	1602 bp upstream
Tssr35609	transcription start site region 35609	1565 bp upstream
Tssr35610	transcription start site region 35610	1498 bp upstream