rs51689933 SNP Detail

Summary

• ID
  rs51689933
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68108851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTATATG CACATTACCA
  GGCAGGATGT CTTAAAGATC CTAGCTTAGA ATCACAGCAC ACTGTACAGC ATCCATCAGT
  TACCCTGGTG ACAGCTTGGC TGGCTGGGAA ACGTGGCTCA TTGCTGCTGC CCAGCATGGA
  GAAGGAATAT CACACCATGT GTCTCTAGCC TAGAAAAAAA AAACTAATTA AAAACCCATT
  M
  AATTCCTAGT GCTTCAGAAA ATAGATAAAT AAATTCAATG TGAGATTTCA CTGGAATGTG
  TCTTGGTTTT ATATCACATT AAATAAGGAA AATCCTAAGC TGAACCATCA CTTACTTATC
  AAGGCTCTAC CTGTACTATA ATTGTTTATC AATGATTAAG GATTTGTTTG TTTGTTTGTT
  TAAGATACAG AACTAATTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60417737	NES15921946	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51689933					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60417737	NES15921946	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68108851 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577984	regulatory region 577984	within coordinates
Rr577985	regulatory region 577985	628 bp proximal
Schip1	schwannomin interacting protein 1	Intron