rs51690234 SNP Detail

Summary

• ID
  rs51690234
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:24558202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGACATGC AAATCTGGTT
  CTGACTGTGC CTAGCCAGGG CTGTACAGTA ATGAGGTTGC TCAGACTCTG TGTGCTCTGC
  TAGGACCCTG TGTTTTACAT GACGTTACTG GCATGTGTGA CCTCTAACAT GACAATACCT
  GAAAAGGTTT TACTTTGTAT TAGTAGAAAT CAAAGGATTA CTGAAATAAG TGTGTGTGCG
  Y
  GTGTGTGTCA ATAAATTCAT CATTATTAAG CAGTTTACAT TCTTGTGTGT CTAGTGATAG
  GGGTCCTTTC CAGACACCTA TGTGTGGATA ATTTGTGGGA CCCAGGCTTC CTTTTAACCT
  GGTGCCTTGC CTCTGAGAAG AATTCCAAAG AGAACGGGCT AGGTGGATGA CCTGCAGTGG
  CAGACCATTG GCAGAGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148811254	ENSMUSSNP4266873	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C		C
ss324295888	CHEV_13_24466088	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs51690234					SNP	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24558202 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	Intron
Gm11342	predicted gene 11342	within coordinates
Rr476038	regulatory region 476038	380 bp proximal
Rr476039	regulatory region 476039	1122 bp proximal
Rr476040	regulatory region 476040	1721 bp proximal
Tssr4016	transcription start site region 4016	1831 bp upstream
Tssr118891	transcription start site region 118891	702 bp downstream
Tssr118892	transcription start site region 118892	1815 bp upstream
Tssr118893	transcription start site region 118893	1851 bp upstream
Tssr118894	transcription start site region 118894	1915 bp upstream
Tssr118895	transcription start site region 118895	1949 bp upstream
Tssr121784	transcription start site region 121784	1723 bp downstream
Tssr121785	transcription start site region 121785	1743 bp downstream
Tssr121786	transcription start site region 121786	1803 bp downstream