rs51690425 SNP Detail

Summary

• ID
  rs51690425
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:117498404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAT ATGACTTCCT GGTGAAGGAG
  M
  ATTCCTTGTG TTGTAAGTGC ATCTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss138889679	ENSMUSSNP2420227	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss324202008	CHEV_12_118773257	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51690425					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117498404 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5227	CpG island 5227	29 bp distal
Gm60307	predicted gene, 60307	280 bp upstream
Rapgef5	Rap guanine nucleotide exchange factor (GEF) 5	within coordinates
Tssr115537	transcription start site region 115537	874 bp downstream
Tssr115538	transcription start site region 115538	842 bp downstream
Tssr115539	transcription start site region 115539	828 bp downstream