rs51691654 SNP Detail

Summary

• ID
  rs51691654
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29149333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGGTTGC TGGGAATTGA
  ACTCAGGACC TCTGGAAGAG CAGTCAGTGC CCTTAACCAC TGAGCCATCT CTCCAGCCCC
  AGAACAAGTT TCATACGAAC TAAGGCGGCA CCTGGGCCAG GCCATGTCTA CAAGTGGGGA
  GCAAGCTCAG TTCAGGCCAG GGCACTGGGG AACTCTGTCT GTCCTTCCTG TTGGGGTCCC
  K
  TGGTGTATGT GTTGGTTGCC CTCCTCTATG GGGTTGACAG GGAGTTGTTG TACCCCCATC
  TTTGGACCTT GTTCCTCTGA CACGTCTGGG ACACACCCAT ATCCCAATTT GCTTTGATAA
  ACAGGGCGGG GGCCCTTTCT ATTTTTAAGT TATCAGTTTG TTCCTTGTGG GTGGTACCGA
  CAGATGGCGT TGTGTTCATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60559610	NES16576383	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51691654					SNP	T	T	T	T	T	T	T	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559610	NES16576383	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29149333 () rs orientation: forward

Symbol	Name	Function Class
Gm16191	predicted gene 16191	within coordinates
Rr392487	regulatory region 392487	within coordinates
Rr524716	regulatory region 524716	within coordinates
Rr524717	regulatory region 524717	173 bp proximal
Rr524718	regulatory region 524718	270 bp proximal
Rr524719	regulatory region 524719	892 bp proximal
Rr524720	regulatory region 524720	1259 bp proximal