rs51692788 SNP Detail

Summary

• ID
  rs51692788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69689237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTAGGCACA TAGGGAGCCA GGAAGAAGCA GAGCTCTGAG
  AGGCCTCCCT TCTCTTACAC TCACCCTTAG AGAACCCCAA CCCAAAAGAA GAGAGCTTCC
  Y
  AACCCCCCAA AGGCCAAAGC CTTCCTGCCT CCATCTGCCA TAACAACATC TTGTTGAACA
  TTTATGGCCT GCCCGAGCTA TGTGTCATTA AGTGTTCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132361388	ENSMUSSNP5781758	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss323731578	CHEV_11_69611913	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51692788					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69689237 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3148	CpG island 3148	1733 bp proximal
Fgf11	fibroblast growth factor 11	within coordinates
Tssr108838	transcription start site region 108838	1232 bp upstream
Tssr108839	transcription start site region 108839	1028 bp upstream
Tssr108840	transcription start site region 108840	1526 bp downstream