rs51694062 SNP Detail

Summary

• ID
  rs51694062
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177810397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAT CACTTCTTCA CATTACGTTG
  T
  ATTCACATCT CACGCTACAA ACTCC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146351736	ENSMUSSNP4361988	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51694062					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177810397 () rs orientation: forward

Symbol	Name	Function Class
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2	592 bp upstream
Cpgi1085	CpG island 1085	257 bp proximal
Gm69850	predicted gene, 69850	within coordinates
Rr25806	regulatory region 25806	1140 bp distal
Rr29061	regulatory region 29061	3 bp proximal
Rr396636	regulatory region 396636	213 bp upstream
Tssr10371	transcription start site region 10371	596 bp upstream
Tssr10372	transcription start site region 10372	635 bp upstream