rs51694405 SNP Detail

Summary

• ID
  rs51694405
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:167198232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCCTGGGC CAAGAACTTT AACTGGCTGC TACAGCAGTG
  AGTTCTTCAC CTGTGGGTCG TGACTCCCAC CTGTGGGTTG TGACTCCCTG GAGGTTGAAC
  R
  ACCCTTTCAC AGGGGTCATA CATCAGATAC CCTGCATATC TGATGTTTAC ATCATGATTT
  GTAACTAACA AAACTACCAC TATAAAGTAA CAATGAAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146037740	ENSMUSSNP5901050	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51694405					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167198232 () rs orientation: forward

Symbol	Name	Function Class
Mgst3	microsomal glutathione S-transferase 3	1303 bp downstream
Rr396523	regulatory region 396523	460 bp downstream
Rr422697	regulatory region 422697	651 bp distal
Rr422698	regulatory region 422698	578 bp distal
Rr422699	regulatory region 422699	521 bp distal
Rr422700	regulatory region 422700	within coordinates
Rr422701	regulatory region 422701	227 bp distal
Tssr14852	transcription start site region 14852	1754 bp downstream