rs51696420 SNP Detail

Summary

• ID
  rs51696420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:110358104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGTTGGA TTGAGAAGGG
  CCTCTGACCT CTCCACTAAG TGAGAGTCCC CTCTCCTATT TCCTTCCTGC CTCCTTCCAA
  AAAGATACTG CCTTGGAAGA TGAGTTCAAT GACAACAGTT GATAACTGTG CCCCATCACA
  ACCACGTACA TTCTTGCAGC TTCCCAATAG CCAAATGAAG TTGGAGCAAA TGAAATTGCA
  Y
  ATGGATGTAC CCATCGGGGT TGGGCTCACC ACCATCAGTT GATCTATGCA TTGTACCCAT
  ATATGGTTTT CTGTGATGGT CTCTATTCAT GGTAAATAGA GGCTTCTTTG ATGAGAGGTG
  GTAGCCAGAC TTATCTGTGG GTATAAGGGT AGGATTTAGA ATGCATTAAG TAATTATGCT
  AGTCTAACAA AGCAGAGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss61312781	NES16918340	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs51696420					SNP	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61312781	NES16918340	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:110358104 () rs orientation: forward

Symbol	Name	Function Class
D10Mit150	DNA segment, Chr 10, Massachusetts Institute of Technology 150	988 bp proximal