rs51696654 SNP Detail

Summary

• ID
  rs51696654
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136014556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTC ACTCGGGAAG AATGGAGACC
  C
  CTGGATCCTA CACAGAGAGA TCTTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147564620	ENSMUSSNP3580457	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321354908	CHEV_4_135843160	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs51696654					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136014556 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15107	CpG island 15107	712 bp distal
Rr398613	regulatory region 398613	1699 bp downstream
Rr602341	regulatory region 602341	1168 bp distal
Rr602342	regulatory region 602342	485 bp distal
Rr602343	regulatory region 602343	615 bp proximal
Rr602344	regulatory region 602344	1319 bp proximal
Tssr39697	transcription start site region 39697	1131 bp downstream
Tssr39698	transcription start site region 39698	1095 bp downstream
Tssr39699	transcription start site region 39699	1055 bp downstream
Zfp46	zinc finger protein 46	Coding-Synonymous