rs51696841 SNP Detail

Summary

• ID
  rs51696841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31897043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATCCCTT AATTCCTCCA
  TTCTGTGCAG GCATATATAG GGAGGGCTGG AACGCTAGCT CACCACCGCA CTGCCCAGAG
  GCTCCTGTCT GACTCACTGC CAGCCTTCGG TCCCTGCATC ACCAAATAGA AGATGGACGT
  CACCATTCAG CATCCTTGGT TCAAGCGTGC CCTGGGGCCC TTCTACCCCA GCCGACTGTT
  Y
  GACCAGTTCT TCGGCGAGGG CCTTTTTGAG TACGACCTGC TGCCCTTCCT GTCTTCCACC
  ATCAGCCCCT ACTACCGCCA GTCCCTCTTC CGCACTGTGC TGGACTCGGG CATCTCTGAG
  GTAAGATGCA ACCACACTGG TTCCTCCTAG CTGCTCAGAG GGGTCTTGGT CTTGTCTAGA
  GGACAGCTAG GGATCCTCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60257449	NES15753518	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51696841					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60257449	NES15753518	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31897043 () rs orientation: forward

Symbol	Name	Function Class
Cryaa	crystallin, alpha A	within coordinates
D17Rua3	DNA segment, Chr 17, Rutgers University 3	446 bp proximal
Gm50222	predicted gene, 50222	within coordinates
Tssr143680	transcription start site region 143680	130 bp downstream
Tssr143681	transcription start site region 143681	855 bp upstream
Tssr143682	transcription start site region 143682	1500 bp upstream
Tssr143683	transcription start site region 143683	1570 bp upstream
Tssr147305	transcription start site region 147305	40 bp downstream
Tssr147306	transcription start site region 147306	62 bp downstream
Tssr147307	transcription start site region 147307	112 bp downstream
Tssr147308	transcription start site region 147308	429 bp downstream