rs51697311 SNP Detail

Summary

• ID
  rs51697311
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112453785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAAATAC TGGGACAGAG
  AAACCAAACC CAAACTTTAG GACTCGTGGC AGCTAAAGTT CAAAGAACCA AAAGGCCAAT
  GGTCTTAGTG TCCACCCGAG AAGAAAAACA CAACTTTAAA ACTGTTGAGA TATCCTCTCT
  CTAATAGAGG GGCTTGGCAC AGCCTCCCCT GAGGTGTCCC ACAAGACAGC TCGCTTCTTA
  R
  CCATCTCTGT GCATTCCTGC AGTCACCTGA CCACAGTCTG TTGTCATCCT TGGCAGTAAG
  ACCTGTTGGA TCAATTCTTC ACAAAGGCAC AGTAAACAGT TGGCTCCCTC ATTCAAAGCA
  GTTTCGTACA ACCTTAGTTC TTCTAGAAAT AGCATCTTTA CAAACCCAGG TGTTTGAAAC
  TGAACAGGTT TTAATTGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52696795	NES15533136	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51697311					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52696795	NES15533136	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112453785 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	within coordinates
Tssr121103	transcription start site region 121103	1138 bp upstream
Tssr121104	transcription start site region 121104	1165 bp upstream
Tssr121105	transcription start site region 121105	1196 bp upstream