rs51697646 SNP Detail

Summary

• ID
  rs51697646
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157120487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTGTAGCC AAAACTATTC ATAACTGATA GCTGCTGGGA
  GAGGGAAAAT CAGTTTTCTT CAGTGGAGTG ACTGGGTATA TCAACCACTC TCCAGGGCAG
  R
  ACTCCATGCT TAGTTTGTTT TTTACTTTAG AAAGAGGAAA AATAGAGCAT GAGTTGGGTG
  TGTAGGGAGT TGGGGGAGGA TATGGAAGGT GTTGGGGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320585263	CHEV_2_157104303	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51697646					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157120487 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12571	CpG island 12571			254 bp proximal
Mroh8	maestro heat-like repeat family member 8			Intron
				Noncoding-Transcript-Variant
Rpn2	ribophorin II			531 bp upstream
Rr397441	regulatory region 397441			181 bp upstream
Rr568459	regulatory region 568459			2 bp proximal
Rr568460	regulatory region 568460			972 bp proximal
Tssr21228	transcription start site region 21228			431 bp upstream
Tssr21229	transcription start site region 21229			459 bp upstream
Tssr21230	transcription start site region 21230			498 bp upstream
Tssr21231	transcription start site region 21231			711 bp upstream
Tssr27165	transcription start site region 27165			945 bp downstream
Tssr27166	transcription start site region 27166			952 bp downstream
Tssr27167	transcription start site region 27167			989 bp downstream