rs51697844 SNP Detail

Summary

• ID
  rs51697844
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:35112687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGACCCA AAGGGATAAA
  GATGTTATTC TTTCTTTCTC TGAATCTTGG CATTCTGTCT TTCCTGGTCA TTCAGTTCTA
  TGTTTGTGCC AGGCAAAGAA TTCATAGTCC CTTGACACCT ACCAGCATCC CTGTTATATC
  TACTCTGGGT CATTCCAGAG CTCAGCATCC CTCCTGACTA GAAGCTGCCT ACATAGTGCA
  M
  TGCCCTGTGG TGCCAGGTTT TCATGTGCAG CGCCCATAGG ATCAAGCTGG TGCTGAGTCC
  AGGTTCGGTT CTGTTCGGTT GGGAAGCCAT CCCCATCATC CTCATCATCT CTGTTGACCT
  TGCAACACCT CTGCAACCAC AGTGGAGGGT CCCAATCTCT CTGGTCTGGA CTTTTCTTTC
  TCTCTCTCTA GAAGGCACCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60718118	NES16346980	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	A	C	C	C	A		C	C	A	C
ss148903614	ENSMUSSNP5374728	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51697844					SNP	C	C	C	C	C	C	C	A	C	C	C	A	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60718118	NES16346980	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:35112687 () rs orientation: forward

Symbol	Name	Function Class
D1Mit243	DNA segment, Chr 1, Massachusetts Institute of Technology 243	1095 bp proximal
Gm53547	predicted gene, 53547	within coordinates