rs51698009 SNP Detail

Summary

• ID
  rs51698009
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34484946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCTCTGG GATCCTCCCA
  TGGCTTTGCG TGTGGTGTGT GTGTGTGTAT AAATTTCAAA ATGCAAGTAA AATCATGTGA
  TCTATGTTTT TTGTTTGTTT TGAGACAGGG CTTGTGTAGC CCTGGCTATC TAGCTGTCCT
  GGAACTCACT CTGTAGACCT AGCTAGTTCT GAGCTCAGAG ATCGGCCTGT CCCTGCCTCA
  Y
  GAGTGCTCAG ACTAAAGGCG TGCACCTCCA CAGCCCAGCT CTGTACATTT CTTATGGCTA
  CCATAAGGGA TTCTTGTGGA GCTGATAATT TAACAGAAAT TGGTTCATGG TGCGAGGTGA
  GGGTGTTCAC TCCCTAAGGC TGAGTGTGTT GGGGATGGGG GTGTGTTTGC TCTTCGGCTT
  CTGATGGCTG CAGTAACCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148888940	ENSMUSSNP6160574	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51698009					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34484946 () rs orientation: forward

Symbol	Name	Function Class
D1Ertd448e	DNA segment, Chr 1, ERATO Doi 448, expressed	within coordinates
Gm28306	predicted gene 28306	1135 bp upstream
Imp4	IMP4, U3 small nucleolar ribonucleoprotein	within coordinates
Tssr6216	transcription start site region 6216	1979 bp downstream
Tssr6217	transcription start site region 6217	961 bp downstream
Tssr6218	transcription start site region 6218	1166 bp upstream