rs51698162 SNP Detail

Summary

• ID
  rs51698162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60631392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTTACAA AAGAAGACAT
  GTATATTAAT CCGAGTCTCT AGACTCCAGG CTCTTCGTCT ATATGATAAG ATCATGGAAT
  AGCTTCAGCT AATCATTGGA GGAAGATCAG ATGCAGTCAC TTAAGCCAAA GCCATCAGGA
  TTTAAATGGG GGGGGGGGCG TTGTTGGTAA AAAGAAGCAA AAGCGACTCC TGTTATGAAG
  R
  TGCATAGATA AAATGCTCTT AGTAGTGAAT ACAACAAACT GATAATTCAC ACGAAGATCT
  ATGAAAACAT CACCATCGCA ATCCTATGCT AAAAAAAAAA TTCCTGTATT CTAAATTGTA
  TTCTTAAATT CTTAAAGTAC TGATAATTCT CCCCTGGTAT AGAAAAATGT TATTTTAGTA
  TTTCCACTGC ATTCTTCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63529564	NES17015459	PERLEGEN	MM_PANEL2	f	SNP	A		G	G		G	G	G	G	A
ss147994488	ENSMUSSNP6329220	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51698162					SNP	A	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63529564	NES17015459	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60631392 () rs orientation: forward

Symbol	Name	Function Class
Gm48947	predicted gene, 48947	688 bp upstream
Rr303268	regulatory region 303268	209 bp proximal
Rr313850	regulatory region 313850	210 bp proximal