rs51699749 SNP Detail

Summary

• ID
  rs51699749
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40691300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ccagagata gaagcaggag gatttctgta
  agtgaggaca gggtgactta tataatgagt tcaaggctaC TGTAGACACT ATCTTGGGGG
  GGGGTAGATA AAAGGTAAAT TTTTATAGTA AGAGACCACG TCGTTTATAA AAATGTCAAC
  K
  ACTTTCTGTT GGTTGACAAC ACTTTCAGAA CAGAAGCCGT CGCATCGCAT CCTTGTACCA
  GCCTCTGTGC ACATTAGGTc cagcctggtc cactcactgt catctgcggt ttgcaccgtc
  agaaacatcc tgacttgtat ccttgcttcc                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136338038	ENSMUSSNP3436835	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322919543	CHEV_9_40588087	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51699749					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40691300 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Gm16096	predicted gene 16096	523 bp downstream
Rr676919	regulatory region 676919	1719 bp distal
Tssr84467	transcription start site region 84467	330 bp upstream
Tssr84468	transcription start site region 84468	1072 bp upstream
Tssr84469	transcription start site region 84469	1124 bp upstream