rs51700111 SNP Detail

Summary

• ID
  rs51700111
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:79210663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAAGATCA AGGTCACCTA
  TCCCAGAATT CTCCTCTAAT GTGCTTTAAA TCAGGCCTTG GAGCTCACTT GGTTGTCTCT
  CTATCTTGGT AATGGGAGAC CCCAGCATGC TGGACTTCTG CAGGATAAAA CACTCTTTGC
  GTTATACTAT TTGAGTTGGG GATAACATTC ATTGACTCTT ATATGGATAA AGAAGTTATT
  Y
  GTCAGCTTTT TGATCTTATC AGATCCCACC AATAAGTGAC ATAGTGCAGA AGACAAGAAT
  GCGAGCAAGT GGTGACTCGG TTTTCATTTG CACATTAGTA AATATTCCTG TTCTTAGGTT
  AGAAAGCTCT GGGCGGGATC CAGATCCTAT AGTTTATTTT CCTTGCTATG TGACCTTCAG
  GAAGTTGGTT TGTTGTTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss52474204	NES15653480	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs51700111					SNP	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52474204	NES15653480	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:79210663 () rs orientation: forward

Symbol	Name	Function Class
Gm2225	predicted gene 2225	2000 bp downstream
Rr186904	regulatory region 186904	1938 bp proximal