rs51700144 SNP Detail

Summary

• ID
  rs51700144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29979776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC ATCATGCTGT CGGAGACCAG
  Y
  GTCCGTTACG CTTCTTAACA GCCGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60991478	NES16140574	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	T	C	C	T	T		C	T	T	T		T
ss148672285	ENSMUSSNP822173	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss322132941	CHEV_7_31065370	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51700144					SNP	T	T	C	C	C	C	T	C	C	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991478	NES16140574	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29979776 () rs orientation: forward

Symbol	Name	Function Class
1700020L13Rik	RIKEN cDNA 1700020L13 gene	682 bp upstream
Cpgi18786	CpG island 18786	within coordinates
Rr400235	regulatory region 400235	within coordinates
Rr644765	regulatory region 644765	242 bp distal
Rr644766	regulatory region 644766	287 bp distal
Rr644767	regulatory region 644767	58 bp proximal
Rr644768	regulatory region 644768	547 bp proximal
Rr644769	regulatory region 644769	1494 bp proximal
Rr644770	regulatory region 644770	1885 bp proximal
Tssr65667	transcription start site region 65667	209 bp downstream
Tssr65668	transcription start site region 65668	163 bp downstream
Tssr65669	transcription start site region 65669	183 bp upstream
Tssr71721	transcription start site region 71721	within coordinates
Wdr62	WD repeat domain 62	within coordinates