rs51702020 SNP Detail

Summary

• ID
  rs51702020
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130133142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGTTGAT GTTTAAATGG
  ACCAATCATG TAAAACCGCG CCAATTCCTC CCCCAGCCCC ACCCCTTTTC TATAAAAACC
  CCTAGCTTCC AAGCCTCACG GACTGTGTGA GATACGTTTC GAACAGGAGC TCCGCCATTA
  TGGCTCCACC ATGTGGTCAA CACCTGTCTC CTGTGGGAGA TATGTGTCAG CCCGGAGCTC
  T
  GTCATTAAAC TACCTCATGC TTTTACATCA AGATGGTCGT CTGTTCGTGA TTCTTGGGTG
  CGCGAATCGA AAATTGAGTG GGGTTTCCCC ACTAGGTTCT TTCAATACCA CAGACTCAGG
  AGACTCAGGA AAGGAGGGAC TCCTCCGCCA GGGTTCGCCA GTAGATTAGA TTTCCAAGTG
  ATTCTTACTG AATCCTTTTT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144521211	ENSMUSSNP147736	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51702020					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130133142 () rs orientation: forward

Symbol	Name	Function Class
Gm4275	predicted gene 4275	1911 bp downstream
Gm57247	predicted gene, 57247	within coordinates
Gm72045	predicted gene, 72045	1909 bp downstream
Nsmce4a	NSE4 homolog A, SMC5-SMC6 complex component	1114 bp downstream
Rr153982	regulatory region 153982	1142 bp distal
Rr153983	regulatory region 153983	542 bp distal
Rr153984	regulatory region 153984	within coordinates
Rr153985	regulatory region 153985	1859 bp proximal
Rr169359	regulatory region 169359	459 bp proximal
Rr169360	regulatory region 169360	1793 bp proximal
Rr381489	regulatory region 381489	within coordinates
Tssr69470	transcription start site region 69470	99 bp downstream