rs51702570 SNP Detail

Summary

• ID
  rs51702570
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTACTGAG CAGGTTCTAC
  TTGCGCAGTA GATACAAGTA CAGGTGAAAT CCAGTTTATA GAAGAGAACA CAGAGAAAAT
  GGGGCTCCAG GAAGAGTGGA CTAGATCACA ATCTGTTAGG AACTGAAGTT TGACCGGCCT
  TTCCATATGG AGATGTCCTT GCTGAAGGCC ATGCCATTCT CCCAAGCGGC AGGTAAGTTT
  R
  AAGACTCAAA GATGCATCTT CCTCACTGTT GGAGAACACA GAAGTGATCT ATGTACTGAT
  AGATAGATAA GCTAGACCCA AGGATGTAGA AAGAACAGGA TGACATAGTG ACCATTAAAG
  TCTCTTTATA CAGACATCTG CTTTCTACCT GTTCCTTCAT ATCAATTCTC ATGAGCAAGA
  CAGATGTGCA AGACAGATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936904	NES16189352	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51702570					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936904	NES16189352	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260024 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	285 bp downstream
Tssr58809	transcription start site region 58809	327 bp upstream
Tssr58810	transcription start site region 58810	353 bp upstream
Tssr58811	transcription start site region 58811	389 bp upstream
Tssr63019	transcription start site region 63019	1493 bp upstream
Tssr63020	transcription start site region 63020	561 bp upstream
Tssr63021	transcription start site region 63021	483 bp upstream
Tssr63022	transcription start site region 63022	444 bp upstream
Tssr63023	transcription start site region 63023	389 bp upstream
Tssr63024	transcription start site region 63024	291 bp upstream
Tssr63025	transcription start site region 63025	259 bp upstream
Tssr63026	transcription start site region 63026	238 bp upstream
Tssr63027	transcription start site region 63027	200 bp upstream
Tssr63028	transcription start site region 63028	175 bp upstream
Tssr63029	transcription start site region 63029	147 bp upstream
Tssr63030	transcription start site region 63030	91 bp upstream
Tssr63031	transcription start site region 63031	61 bp upstream
Tssr63032	transcription start site region 63032	30 bp upstream
Tssr63033	transcription start site region 63033	16 bp upstream
Tssr63034	transcription start site region 63034	within coordinates
Tssr63035	transcription start site region 63035	13 bp downstream
Tssr63036	transcription start site region 63036	67 bp downstream
Tssr63037	transcription start site region 63037	97 bp downstream
Tssr63038	transcription start site region 63038	134 bp downstream
Tssr63039	transcription start site region 63039	193 bp downstream
Tssr63040	transcription start site region 63040	251 bp downstream
Tssr63041	transcription start site region 63041	300 bp downstream
Tssr63042	transcription start site region 63042	325 bp downstream
Tssr63043	transcription start site region 63043	335 bp downstream
Tssr63044	transcription start site region 63044	357 bp downstream
Tssr63045	transcription start site region 63045	448 bp downstream
Tssr63046	transcription start site region 63046	467 bp downstream
Tssr63047	transcription start site region 63047	490 bp downstream
Tssr63048	transcription start site region 63048	518 bp downstream
Tssr63049	transcription start site region 63049	533 bp downstream
Tssr63050	transcription start site region 63050	557 bp downstream
Tssr63051	transcription start site region 63051	609 bp downstream