rs51703682 SNP Detail

Summary

• ID
  rs51703682
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109750080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG TCTATTAAAT CTGAGCAGGG
  Y
  TGGCAGGTGA GGAGCTAGGG TTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147206238	ENSMUSSNP4782276	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320456108	CHEV_2_109759892	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51703682					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109750080 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	874 bp distal
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	Intron
Rr562510	regulatory region 562510	149 bp distal
Rr562511	regulatory region 562511	1951 bp distal
Rr562512	regulatory region 562512	1912 bp distal
Rr562513	regulatory region 562513	1524 bp distal
Rr562514	regulatory region 562514	286 bp proximal
Tssr19311	transcription start site region 19311	1999 bp downstream