rs51707007 SNP Detail

Summary

• ID
  rs51707007
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:82948258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAAGCTTG GGAAATTTAA
  TCAGCCAGTA CACATGAAAC AGGCATGGAT GGGAACTACC CAAATTCTAG TCCATGTGGA
  GGGCTGGGGC TGGAAAATGA GGATGTGCTG ACATCTACTG GACACCAAGA AAAACTCAAC
  CCAAACGGTT ATACGTGTGT ACTCCACTAT TCACAAGGCA TGCCCACCCC GGGAATCTGG
  Y
  TTTACGGGTT TGAACTGGAC CTCTAGCCCT CAAATCCTGT CAGTTTGCTA CAGAAGCTAT
  CACAGGGAAA GGAGGAACTC AGTAGTATCC TGTTAAGGAA GAAATGCTGA CTAATGTTAT
  ATAAAATGCA TATGATACAT GGGACATATT ACATAATTCA TGTGGAGGGT CATTGAACTC
  AGAAGTTTGC ACGTGTTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60904296	NES15955659	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51707007					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904296	NES15955659	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:82948258 () rs orientation: forward

Symbol	Name	Function Class
M1ap	meiosis 1 associated protein	within coordinates
Rr632712	regulatory region 632712	1288 bp distal
Rr632713	regulatory region 632713	within coordinates
Rr632714	regulatory region 632714	75 bp distal