rs51708065 SNP Detail

Summary

• ID
  rs51708065
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71248166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGA TGTTGTATCT ATGTAATAGG
  W
  GCGTGTATGG TGAGCATACC GTGTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133274954	ENSMUSSNP1198681	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss321817332	CHEV_6_71221176	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51708065					SNP	A	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71248166 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17522	CpG island 17522	220 bp proximal
Krcc1	lysine-rich coiled-coil 1	495 bp upstream
Mir8112	microRNA 8112	489 bp upstream
Rr379579	regulatory region 379579	1282 bp downstream
Rr379580	regulatory region 379580	within coordinates
Tssr56988	transcription start site region 56988	253 bp downstream
Tssr56989	transcription start site region 56989	393 bp upstream
Tssr56990	transcription start site region 56990	490 bp upstream
Tssr61348	transcription start site region 61348	456 bp upstream
Tssr61349	transcription start site region 61349	434 bp upstream
Tssr61350	transcription start site region 61350	299 bp downstream