rs51709316 SNP Detail

Summary

• ID
  rs51709316
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:11505053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTTCTGC ATCCACCTTA
  CTGGATGCTC CTGATATCCC ACACAATGAA ATTTGATTGA TCCAAATGTT ATATAGGAAG
  TGTTTGGAAA GTACATATCA GGTGGAACTA GAATGCACAC CCTGCCTCAG TTAGCCCCAA
  GCCTATACCC AGATCCAACT CAACCCTACT CAGGATTATA CTGCTTATAT TGAAGCTACT
  R
  CTTCCTTGTC TAATCTGGTC ATCACAAATC CTTGTGTTTT TTAGAAAGAA CCAGGTTGGA
  GATCAAATTG TCCTGTTTTC TTTGTATCTT TTCAGCCCCT GTTGGGGTGG CTAGAGCACA
  TTGTGCTTGG TTGGATGCTG TGGGATTGTA TCATTGCAGT GTGCATGTAG AGAGTTTCAA
  GCAGCTTATG GACAAAATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss52615886	NES15504971	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A		A	A
ss324264606	CHEV_13_11582434	CHEVERUD	SCREENING_POP	f	SNP								G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs51709316					SNP	A	A	A	A	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52615886	NES15504971	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:11505053 () rs orientation: forward

Symbol	Name	Function Class
Rr387978	regulatory region 387978	within coordinates