rs51709741 SNP Detail

Summary

• ID
  rs51709741
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136497977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAATGAAT TGTCTGAATG
  TCAGTGGTTG ATTCTTTAGT ATTTTAGAAA CAAGTACTAA AAGTTTGAAA TTTTAGTTTG
  GTTATAATTA AATGAAGCAT TGTGCATGTA TGTACACACA CACACACACA CACACAGACA
  GACAGACATG TTACTCAAAG TATGAACAAT CACTGATATG TAGTTTAGAA AGAATCAGGC
  Y
  GGAATGATTT AAGTCATAAA ATTAAAATTT TATTTTTTAA AAATTACTTG ATTTTGTACT
  CTGTTGGAAT ATTTTCACGT CCACAGTATG AAGATTTAGT ATTGTGTTAA TCGCCCTTAA
  CTACTGTGGT GATGTTTGTA ACTTCACTTT TGCTGTGGTA GATCAGTCTA TAAATATTTA
  TCACTATATA TACATATAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60953378	NES16181919	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51709741					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60953378	NES16181919	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136497977 () rs orientation: forward

Symbol	Name	Function Class
Atf7ip	activating transcription factor 7 interacting protein	within coordinates
Cpgi18104	CpG island 18104	1639 bp distal
Rr145858	regulatory region 145858	within coordinates
Rr145859	regulatory region 145859	223 bp proximal
Rr400015	regulatory region 400015	1713 bp downstream
Tssr59318	transcription start site region 59318	572 bp downstream
Tssr63805	transcription start site region 63805	1902 bp upstream