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rs51710748 SNP Detail
Summary
  • ID
    rs51710748
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr10:64521772 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAATGTAAAG GAACAGAAGA
    AGCACTGTCT CCCCAGCTTC GAAGACTCAT GGAGCCTGTT CCAGAGTATC ACATGTCCCT
    GATGACAGAA GATTTGAATG TTACAGGGAC AGAAGAAATT GCTAGTCAAA GCTTCAGTAG
    GAGATGGAAT TGCAAAGAGA TAGTAGCTCA CCAGTTAATA CACAGAGATC ATTTTTCTCC
    K
    TCAGAGGCTG TTTCTGTATC GCATCAGATG CTTCAGATTG TAACTGCTAA AGAGTCATAT
    CAATCACAGA AGACTGAAGC TTGTTATGAT AGTATTAACA CAATCAAGAG ACCTCAAGTC
    TGCTCTCATA TGGATTCCAT AGTGGCTATA GAGTCTCAAT TCTCTCCTTT AAATACACTG
    TGACATCATG TTTGGTTACA                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss52349153 NES15280248 PERLEGEN MM_PANEL2 f SNP G G G G G G T G G G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs51710748 SNP G G G G G G T G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss52349153 NES15280248 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr10:64521772 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ctnna3 catenin alpha 3 within coordinates
Tssr93785 transcription start site region 93785 476 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory