rs51710826 SNP Detail

Summary

• ID
  rs51710826
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48662747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTGTGTT AATTTCAGGA
  GCAGGATCAG CTTGAATGGG GCTCCATCAC TGAAAAGATA ATACCAGAAT ATATTGCAAT
  TCTTTGATGC TGTGTCTATA GAGTTCTCTG CAAAACTTTC CAGGTACCTT CATGTAGCCA
  AGGGACACAA CTTGGCAGTT CAGCGGGTTA GAGTGGGGTT TGTGAATCTT GTAAGTTAGA
  R
  CTTTTCCAAA CAGATGAAGT GGGTTTACTT CCTCAAGTCT CTTGAACCAC ACCTCTTCTA
  CTTTGGCCTA GAATCATAAT TCACAAGAAA TTGCTAAACA GTACATGTGG GTGGCCAAAA
  TGTACTGAAA GTGCTTACTC CACTGGGGTG TGTTTGTATG TGTTAAGGGT ACCTAGGTCA
  GCAATCCCAT GGCGTATAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60458794	NES16437358	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51710826					SNP	A	A	A	A	A	G	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60458794	NES16437358	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48662747 () rs orientation: forward

Symbol	Name	Function Class
Retnla	resistin like alpha	225 bp upstream
Tssr138680	transcription start site region 138680	93 bp upstream
Tssr138681	transcription start site region 138681	147 bp upstream
Tssr138682	transcription start site region 138682	224 bp upstream
Tssr138683	transcription start site region 138683	270 bp upstream
Tssr138684	transcription start site region 138684	287 bp upstream
Tssr138685	transcription start site region 138685	335 bp upstream
Tssr138686	transcription start site region 138686	459 bp upstream
Tssr138687	transcription start site region 138687	500 bp upstream
Tssr138688	transcription start site region 138688	1159 bp upstream
Tssr138689	transcription start site region 138689	1787 bp upstream
Tssr138690	transcription start site region 138690	1845 bp upstream
Tssr138691	transcription start site region 138691	1882 bp upstream