rs51711353 SNP Detail

Summary

• ID
  rs51711353
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44889337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGCGCGC GCGCGCCTTT GGAGGCCAGA GGACAACATT
  GGAAGCTGTT CATCTTTTTT TAAAAAAATT TTAACGATGT GTGTGTGTGT GTATGTCTGC
  GCCACATGGT GCTTATAGAG GGCAGAAGAT AGATAAATTT TCGGGACTGG GCCTCTCCTG
  Y
  CACAGGCTGT GCTCCAAGGC AGGTTCTGCC ATCTCCAATA AGCCAAGTAA AAGAACCAAA
  TTTCTAGAGG AAACAGAAAA AGGTTTACAC ACAGTGTGGT CACATTTAGA AGGGCACAAA
  GCGATCTGGT GATCCCCTTC AATTCATTTT TGGGGTCCCT CACTGAGACT GAGGTGTAAA
  TAGAAGGCTA ATGTTATGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149131906	ENSMUSSNP7036473	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51711353					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44889337 () rs orientation: forward

Symbol	Name	Function Class
Cd37	CD37 antigen	798 bp upstream
Cpgi19038	CpG island 19038	657 bp proximal
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	1172 bp upstream
Tssr66503	transcription start site region 66503	1161 bp upstream
Tssr66504	transcription start site region 66504	1196 bp upstream
Tssr72351	transcription start site region 72351	1157 bp upstream
Tssr72352	transcription start site region 72352	1049 bp upstream
Tssr72353	transcription start site region 72353	847 bp upstream
Tssr72354	transcription start site region 72354	810 bp upstream
Tssr72355	transcription start site region 72355	780 bp upstream
Tssr72356	transcription start site region 72356	626 bp upstream
Tssr72357	transcription start site region 72357	618 bp upstream
Tssr72358	transcription start site region 72358	593 bp upstream
Tssr72359	transcription start site region 72359	563 bp upstream
Tssr72360	transcription start site region 72360	526 bp upstream
Tssr72361	transcription start site region 72361	503 bp upstream