rs51712359 SNP Detail

Summary

• ID
  rs51712359
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52654459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTCAACT TGGCTGTAGT
  TCTTTTTATT CACAGGAAAG GAACATCCTG TGCTCTGACA CTCTTTAAAA GCAAGAACAA
  GAAAAATGTA ACATCCACCG CAAGTTATTT CCTGTTCAGG AATTTTGCTC TCATTTAAAA
  GAGAAGCGAC TCAACCCAAA TCCTTACATC CTCCTTGGCA GGAAGAGCTG AGTCATCACC
  R
  CACCTATGAT GGATGTGCTT CATCTCCTCT GACATGGATA AGCTCAAGCT TCCGAGACTG
  AGGTGATCAG CCTGGATTCC AGGTGGCAAC CATTATGAGA ACCTACAAAA CACCAGAGCA
  GGAGCTAGCT CCTGAGAGGG CCGTGGGTTT CTGAGAGATC TTTTTGAATA CTTAGAGTTC
  TCCCCTGGAA CTCATGGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52423925	NES15399053	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51712359					SNP	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52423925	NES15399053	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52654459 () rs orientation: forward

Symbol	Name	Function Class
Gm35239	predicted gene, 35239	within coordinates
Gm59577	predicted gene, 59577	1867 bp upstream
Tssr113445	transcription start site region 113445	33 bp downstream