rs51712739 SNP Detail

Summary

• ID
  rs51712739
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:99781957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAAAAAA AAAGTGTCGT
  ACTGTGATTT CTGCACCATT AGTACTGGTC ATGGGATCAG ACCACATTAT CACCGTTGAC
  CCGCATGCCT ATCAGATCCA GGGAGCCATT GTTACCTGTA ATGACTTCTA CAAGAGCCTG
  CTGTTCCACA GTAAATTCAG GGGCGCGTTC CTGAGTGGAG GAACTGTAAC GTCCTTCCCT
  R
  GGTGCAGGGA AACCAAAATG GTCACCTCAA GTGTAAACAT CTTGACTGTG GAATTTGCTC
  TGATGGATGA AGAGAAAGAA AAGGAAATGA AGTGACCCCC GTGTCATCGT GATGGCTGAT
  ACAGCTCGCA CGTGTGTATC ACGTGTTGTC CACTGTGCCA CCAGTTAATG CTGTCCTCAT
  AGGACCTTCC CCTGCCAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63629240	NES17045208	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51712739					SNP	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63629240	NES17045208	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:99781957 () rs orientation: forward

Symbol	Name	Function Class
Gm18890	predicted gene, 18890	within coordinates
Gm49494	predicted gene, 49494	within coordinates
Gm63271	predicted gene, 63271	within coordinates
Rr308871	regulatory region 308871	within coordinates
Rr391191	regulatory region 391191	1712 bp upstream