rs51713717 SNP Detail

Summary

• ID
  rs51713717
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13429142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACGGCCCG TGCGTGGTGT CCGTACAGGA GACGGAAAAG
  TGGATGGAGG AGGCGATGCG AATGGTGAGG AATCGGGCAG GTGGATGCTG AGAGCGCAAA
  Y
  TTTCTCCCGG CCATATCCTG ACCAGAGTAG TTGAGCAAAT GTGCCGGGCG CGCTATCTAT
  CATGTCTGAA AATACCTGAA GCAGCAACTT GTTTTATTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146822702	ENSMUSSNP740316	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51713717					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13429142 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	within coordinates
Cpgi1315	CpG island 1315	within coordinates
Pex3	peroxisomal biogenesis factor 3	256 bp upstream
Rr368928	regulatory region 368928	87 bp downstream
Rr427802	regulatory region 427802	571 bp distal
Rr427803	regulatory region 427803	494 bp distal
Rr427804	regulatory region 427804	289 bp distal
Rr427805	regulatory region 427805	within coordinates
Rr427806	regulatory region 427806	994 bp proximal
Tssr92399	transcription start site region 92399	159 bp downstream
Tssr92400	transcription start site region 92400	140 bp downstream
Tssr96771	transcription start site region 96771	528 bp upstream
Tssr96772	transcription start site region 96772	337 bp upstream
Tssr96773	transcription start site region 96773	313 bp upstream
Tssr96774	transcription start site region 96774	272 bp upstream
Tssr96775	transcription start site region 96775	245 bp upstream
Tssr96776	transcription start site region 96776	232 bp upstream