rs51714030 SNP Detail

Summary

• ID
  rs51714030
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172196477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAT AACTTTCTAT ATGCCATTTT
  R
  CTTCCTGCAG ATGACGTCGG TCGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120009846	PARCsnp_1.19001	PARC_SEQ	INBRED	f	SNP		A	G
ss120013134	PARCsnp_1.08834	PARC_SEQ	INBRED	f	SNP		A	G
ss146189506	ENSMUSSNP5903813	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320124583	CHEV_1_174299041	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs51714030					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172196477 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	19 bp proximal
Cpgi1046	CpG island 1046	874 bp proximal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Rr423550	regulatory region 423550	58 bp proximal
Tssr10190	transcription start site region 10190	1563 bp upstream
Tssr10191	transcription start site region 10191	1774 bp upstream
Tssr10192	transcription start site region 10192	1954 bp upstream