rs51714372 SNP Detail

Summary

• ID
  rs51714372
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:85699285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTCAGTT CCTCCATCCT
  TTGTTTCCTC TAATTATCAA TTCTAAGAAG GTGAAAGGAA ACCCTAGTGA CTTTCTCACA
  GCAAGTTGAC CTGTGCCAGG GTCCAGTACT GGTCTCTGCA CACACCCCGG GATAATTTAC
  ACATCTCCAT CCCTTTTAAC TCCACTCCTT CAGAGGAGAG CAGGCACACT TACATAGCTT
  Y
  TTCAGATGAT ACATTCTCAC GGAAGGTACC ACGAGGGCCA AGACTGGAGA AGGCCAAACA
  ACAGTTAAAG TAAAAGAGGG CATGGATTTG AGAGAGAACA AGGTGTGTGT GGGGTGGACG
  GGTGGAGGAG TCCGAGAGAG CCTGAATGGA TCCTGAAATA TATCGGGACA TAGAAGGAGG
  ATGCTGCTGA AAGCACTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60245668	NES15750945	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51714372					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60245668	NES15750945	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85699285 () rs orientation: forward

Symbol	Name	Function Class
Adamts5	ADAM metallopeptidase with thrombospondin type 1 motif 5	1272 bp upstream
Cpgi8391	CpG island 8391	1925 bp distal
Cpgi8392	CpG island 8392	1087 bp distal
Gm46558	predicted gene, 46558	within coordinates
Gm60185	predicted gene, 60185	1819 bp upstream
Rr325517	regulatory region 325517	284 bp distal
Tssr141917	transcription start site region 141917	1764 bp upstream
Tssr141918	transcription start site region 141918	1706 bp upstream
Tssr141919	transcription start site region 141919	1652 bp upstream
Tssr141920	transcription start site region 141920	1326 bp upstream
Tssr141921	transcription start site region 141921	1264 bp upstream
Tssr141922	transcription start site region 141922	1035 bp upstream
Tssr141923	transcription start site region 141923	569 bp upstream