rs51715324 SNP Detail

Summary

• ID
  rs51715324
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164286881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGATGTCG CAGAGCACTG TGTTGGACAT GACCATTCTT
  TCCATCCTTG TTGGCTGAAA ATCCGCCCTT ATTTTCATCC ACCGAGCCCC TGAACAGCTT
  Y
  CCACACAGCT CTTATGGTGA TGACACAGCA GAAAACATGG CGAGGCTTCT GCAGTGGCTG
  CAGAAAAGCC TGTCCCTGGA GCGACCTGGC CGGTCGCGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145978945	ENSMUSSNP3428833	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51715324					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164286881 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	957 bp upstream
Cpgi945	CpG island 945	236 bp distal
Gm32391	predicted gene, 32391	within coordinates
Gm70485	predicted gene, 70485	299 bp downstream
Gm70492	predicted gene, 70492	566 bp upstream
Rr422212	regulatory region 422212	1202 bp distal
Rr422213	regulatory region 422213	968 bp distal
Rr422214	regulatory region 422214	1052 bp distal
Rr422215	regulatory region 422215	797 bp distal
Rr422216	regulatory region 422216	888 bp distal
Rr422217	regulatory region 422217	577 bp distal
Rr422218	regulatory region 422218	76 bp distal
Rr422219	regulatory region 422219	1107 bp proximal
Tssr9788	transcription start site region 9788	782 bp downstream
Tssr9789	transcription start site region 9789	765 bp downstream
Tssr14746	transcription start site region 14746	1300 bp upstream
Tssr14747	transcription start site region 14747	949 bp upstream
Tssr14748	transcription start site region 14748	575 bp upstream
Tssr14749	transcription start site region 14749	1527 bp downstream
Tssr14750	transcription start site region 14750	1542 bp downstream