rs51715773 SNP Detail

Summary

• ID
  rs51715773
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52653347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTCCTGTT TCTTTTTTCC CATCCTGCAA CCCTCCCGTC
  AACACTGCAT ACATTACACT AAACATGTTT ACTCAGTATT AGACTTTTGC TATAAATTAT
  K
  TTCATGTCTT ACACCACACA TTTGCAATAT TAAAATGCTT TGGCTTCTGA TGAACTCAAA
  ATATGTTTAA ACCGGGTGTG GTGGCTCATG CCTTTAATCC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52423943	NES15399097	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51715773					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52423943	NES15399097	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52653347 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4597	CpG island 4597	1529 bp distal
Gm23296	predicted gene, 23296	1973 bp upstream
Gm35239	predicted gene, 35239	within coordinates
Gm59577	predicted gene, 59577	755 bp upstream
Rr369517	regulatory region 369517	1581 bp downstream
Rr403284	regulatory region 403284	1847 bp downstream
Rr466027	regulatory region 466027	1682 bp distal
Rr466028	regulatory region 466028	904 bp distal
Tssr113445	transcription start site region 113445	1074 bp upstream