rs51716245 SNP Detail

Summary

• ID
  rs51716245
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:81492483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCACAC AGAGATTACT
  GGCTAGGCGC ACTTGTTATA TGTTTCCCTG TCAAAACCTT AATAAGTTTT CTACATGTAA
  GCAATTCTCG ATTTCACAGT GGGAAAGAAA ATGCAATGGA ACTATCTAGA TGTTGGTGTT
  TGTGCACAAA GGTCGCATAC TAGAGAACAG CTGTTGGTTG CTCCAACAAT TTGGAACAGG
  W
  AGGGCATTCA GACAGTTCAG TATGAGGAAC AATCCTGCCG ACAGCTCCGT GAGCTGTGCA
  GCTTGCAGTG CAGGGTGGTG ATGCTTCCAC CACAGCCGAG GCTTTGATCT AGCATGTGAT
  GTGTGTTCCC AGTGACCATG CTCAGGGTGT GGAAAGACAG ACAGCCCCAT GAGCCCAAGC
  AGAAGACGGA TCTCATGCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63200441	NES17463002	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51716245					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63200441	NES17463002	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:81492483 () rs orientation: forward

Symbol	Name	Function Class
D18Mit2	DNA segment, Chr 18, Massachusetts Institute of Technology 2	652 bp distal
D18Mit3	DNA segment, Chr 18, Massachusetts Institute of Technology 3	652 bp distal
Gm30288	predicted gene, 30288	within coordinates