rs51716678 SNP Detail

Summary

• ID
  rs51716678
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:20413848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTCAGGT TTCCTTGTGA
  TTCAAGGGCC CATGGCATGT CTCTGGATAA GCAGATTGCC ATGGATCGAG GTACTCGGCC
  CTGAGTGGAG AGAGTGAGGG AATGAAGAAC AGACAAACAG ACAAACAGGC AGGCACAAGG
  AAAGCTGGGA TCAGGTAATC TGAGCGTGGA AGGAAGGAGA CGCACAGCCA CGGGAGCTCA
  R
  CGTGTATATT ATCCAGAGGT GAAAAGGAGG TAGGGTTACT CTGAACAGCT GCACTAGGCA
  GTAGGGTTAA TTCCATACAG ATAATCAAGG AGACAGAGTT TGTGGAATAC AGCTGGGAAC
  AGTCTTCAGA CCGTACACAT CCAAGGGAAA GGCTTTAATG AACAGTTTCC AGCACACTAT
  AAATACTTGG TCTGGTTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss63231290	NES17473172	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		A	G	A	G		G
ss325739984	CHEV_19_20510974	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51716678					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63231290	NES17473172	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:20413848 () rs orientation: forward

Symbol	Name	Function Class
D19Mit23	DNA segment, Chr 19, Massachusetts Institute of Technology 23	395 bp distal
Gm32689	predicted gene, 32689	1229 bp upstream
Gm41816	predicted gene, 41816	1270 bp upstream
Rr356916	regulatory region 356916	1448 bp distal
Rr356917	regulatory region 356917	553 bp proximal
Rr361508	regulatory region 361508	566 bp proximal
Rr364130	regulatory region 364130	1578 bp distal