rs51716682 SNP Detail

Summary

• ID
  rs51716682
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:79177540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATCAGCG GCTTTATGGT
  ATCCGCCTTG GTGGCTTAGG CATCGGGGGC GGGGGGAGCG TGTCCAGGGA AAGAGAGGAC
  AGGTCCAATG GTGACTTAAC GGCAGGCGCG TCCCAGGCCC TGGAGAGCTG TAGTCCTCCG
  AGAAGGTGCG CCGGGGGCTG GTTGGAGGCG TGTCCGAGAG ATGCTGACGT CACAGGGCGG
  Y
  GCGCTCGCCT AGTGAAGCAT CGAAGCTGTG GGAGGCTGCA CTCACTCGAG GTCCTGAGTT
  GCACCGAGCC GGTTCTCCTA GGGTAATCCC CTCCCTGCCA ATCATGTTCC TGAGGAGCAG
  CGCCTCCCGT CTCCTCCACG GGCAAATTCC TTGCGTCCTG ACGAGATCCG TCCACTCTGT
  AGCTATAGTC GGAGCCCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61653373	NES17602661	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51716682					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61653373	NES17602661	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:79177540 () rs orientation: forward

Symbol	Name	Function Class
Arg2	arginase type II	22 bp upstream
Cpgi4801	CpG island 4801	within coordinates
Tssr3873	transcription start site region 3873	within coordinates
Tssr114077	transcription start site region 114077	34 bp upstream
Tssr114078	transcription start site region 114078	1598 bp upstream
Tssr116820	transcription start site region 116820	1402 bp downstream
Tssr116821	transcription start site region 116821	1427 bp downstream