rs51717989 SNP Detail

Summary

• ID
  rs51717989
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138196255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGTTTGTT GCTAGAGGAA TGCTGTGACT TTTAAAAAAA
  TCTTTTCCAC CTTAATACAC CAGAAAAGCT CATGTTTTCT TGAATAACTT TTCCTGTATA
  W
  CCAACCACTG TAAACTTTTA ATAAAAATGT ATACATTTAA GAAAATTAGT GACTGCATAT
  GTGTATATGT TTGTATATGA CATCTAACTG TATAAATCC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135953639	ENSMUSSNP1861726	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51717989					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138196255 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13875	CpG island 13875	646 bp distal
Metap1	methionyl aminopeptidase 1	1112 bp upstream
Rr586147	regulatory region 586147	489 bp distal
Tssr31986	transcription start site region 31986	1613 bp downstream
Tssr31987	transcription start site region 31987	1592 bp downstream
Tssr31988	transcription start site region 31988	709 bp downstream
Tssr35894	transcription start site region 35894	1450 bp upstream
Tssr35895	transcription start site region 35895	1083 bp upstream