rs51718382 SNP Detail

Summary

• ID
  rs51718382
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30907999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCTTCCC AGTGGTTCGC
  CGCACTGGGC AGAAACAGGG TCCTGTGAAT CGAGGGTAGC GAACGAGAAG GACCTCGAGG
  ACAGAGGGCC CACTCCCACC TTCCAAGCGA GCCGTGCTCT TCTTCGCGGC CTAGCAGCGC
  CCCCCGCTGC ACACTTTTCG GGGCCTCAGC ACCAATGGTT CCCATAGCGA CGCCTGCATT
  R
  GTGAGAGGAG GTTCCCCTCT CTCGGGCCAT CTGATGGGGG TGGGCGTGGG GCTCCTGGGT
  TCTGGAACTC TAACTCTTCC TGAGTTAGTG TCCTGGGATC TGGAAACAGT AGGTTCCTCA
  GGAGGTTCTT GTGTCGGGCT CTAACCTTGG TCCCCACTCT TTTCCGCTCT TGGCCTCGCT
  CCCCAGGTCT GAATTGGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60988990	NES16133965	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51718382					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60988990	NES16133965	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30907999 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18840	CpG island 18840	within coordinates
Gm37292	predicted gene, 37292	within coordinates
Gm73020	predicted gene, 73020	within coordinates
Rr645057	regulatory region 645057	222 bp distal
Rr645058	regulatory region 645058	within coordinates
Rr645059	regulatory region 645059	46 bp distal
Tssr65855	transcription start site region 65855	735 bp downstream
Tssr65856	transcription start site region 65856	211 bp downstream
Tssr65857	transcription start site region 65857	184 bp downstream